






















下载Using EntrezDirect as noted to get structure accessions
https://www.ncbi.nlm.nih.gov/books/NBK179288/
for i in `cat all.epi.regulators.txt` do echo $i esearch -db structure -query "$i [GENE]" | esummary | xtract -pattern DocumentSummary -element PdbAcc,ExpMethod,Resolution,PdbClass,PdbDepositDate,PdbDescr,string > $i.pdb_id done
偶尔会有网络连接问题
最后再下一遍
ls *.pdb_id | sed "s/.pdb_id//" > downloaded.list grep -vxFf downloaded.list all.epi.regulators.txt
参考:
此内容由惯性聚合(RSS阅读器)自动聚合整理,仅供阅读参考。 原文来自 — 版权归原作者所有。