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Keep the gradient flowing

Policy Gradients Part 1: The REINFORCE Estimator On the Link Between Optimization and Polynomials, Part 6. Optimization Nuggets: Stochastic Polyak Step-size, Part 2 Optimization Nuggets: Stochastic Polyak Step-size On the Convergence of the Unadjusted Langevin Algorithm The Russian Roulette: An Unbiased Estimator of the Limit Notes on the Frank-Wolfe Algorithm, Part III: backtracking line-search On the Link Between Optimization and Polynomials, Part 5 Optimization Nuggets: Implicit Bias of Gradient-based Methods Optimization Nuggets: Exponential Convergence of SGD On the Link Between Optimization and Polynomials, Part 4 On the Link Between Optimization and Polynomials, Part 3 On the Link Between Optimization and Polynomials, Part 2 On the Link Between Polynomials and Optimization, Part 1 How to Evaluate the Logistic Loss and not NaN trying Notes on the Frank-Wolfe Algorithm, Part II: A Primal-dual Analysis Three Operator Splitting Notes on the Frank-Wolfe Algorithm, Part I Optimization inequalities cheatsheet A fully asynchronous variant of the SAGA algorithm Hyperparameter optimization with approximate gradient Lightning v0.1 scikit-learn-contrib, an umbrella for scikit-learn related projects. SAGA algorithm in the lightning library On the consistency of ordinal regression methods Holdout cross-validation generator IPython/Jupyter notebook gallery PyData Paris - April 2015 Data-driven hemodynamic response function estimation Surrogate Loss Functions in Machine Learning
Plot memory usage as a function of time
Fabian Pedregosa · 2014-11-07 · via Keep the gradient flowing

:og_image: http://fa.bianp.net/blog/images/2014/mprof_example.png

One of the lesser known features of the memory_profiler package is its ability to plot memory consumption as a function of time. This was implemented by my friend Philippe Gervais, previously a colleague at INRIA and now at Google.

With this feature it is possible to generate very easily a plot of the memory consumption as a function of time. The result will be something like this:

where you can see the memory used (in the y-axis) as a function of time (x-axis). Furthermore, we have used two functions, test1 and test2, and it is possible to see with the colored brackets at what time do these functions start and finish.

This plot was generated with the following simple script:

import time

@profile
def test1():
    n = 10000
    a = [1] * n
    time.sleep(1)
    return a

@profile
def test2():
    n = 100000
    b = [1] * n
    time.sleep(1)
    return b

if __name__ == "__main__":
    test1()
    test2()

what happens here is that we have two functions, test1() and test2() in which we create two lists of different sizes (the one in test2 is bigger). We call time.sleep() for one second so that the function does not return too soon and so we have time to get reliable memory measurements.

The decorator @profile is optional and is useful so that memory_profiler knows when the function has been called so he can plot the brackets indicating that. If you don't put the decorator, the example will work just fine except that the brackets will not appear in your plot.

Suppose we have saved the script as test1.py. We run the script as

where mprof is an executable provided by memory_profiler. If the above command was successful it will print something like this

$ mprof run test1.py
mprof: Sampling memory every 0.1s
running as a Python program...

The above command will create a .dat file on your current working directory, something like mprofile_20141108113511.dat. This file (you can inspect it, it's a text file) contains the memory measurements for your program.

You can now plot the memory measurements with the command

This will open a matplotlib window and show you the plot:

As you see, attention has been paid to the default values so that the plot it generates already looks decent without much effort. The not-so-nice-part is that, at least as of November 2014, if you want to customize the plot, well, you'll have to look and modify the mprof script. Some refactoring is still needed in order to make it easier to customize the plots (work in progress).