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Efficient tree-structured categorical retrieval
Djamal Belazzougui, Gregory Kucherov · 2020-06-03 · via cs.DS updates on arXiv.org

We study a document retrieval problem in the new framework where $D$ text documents are organized in a {\em category tree} with a pre-defined number $h$ of categories. This situation occurs e.g. with taxomonic trees in biology or subject classification systems for scientific literature. Given a string pattern $p$ and a category (level in the category tree), we wish to efficiently retrieve the $t$ \emph{categorical units} containing this pattern and belonging to the category. We propose several efficient solutions for this problem. One of them uses $n(\logσ(1+o(1))+\log D+O(h)) + O(Δ)$ bits of space and $O(|p|+t)$ query time, where $n$ is the total length of the documents, $σ$ the size of the alphabet used in the documents and $Δ$ is the total number of nodes in the category tree. Another solution uses $n(\logσ(1+o(1))+O(\log D))+O(Δ)+O(D\log n)$ bits of space and $O(|p|+t\log D)$ query time. We finally propose other solutions which are more space-efficient at the expense of a slight increase in query time.