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PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Exact Analysis of Pattern Matching Algorithms with Probab...
Tobias Marschall, Sven Rahmann · 2010-09-30 · via cs.DS updates on arXiv.org

We propose a framework for the exact probabilistic analysis of window-based pattern matching algorithms, such as Boyer-Moore, Horspool, Backward DAWG Matching, Backward Oracle Matching, and more. In particular, we show how to efficiently obtain the distribution of such an algorithm's running time cost for any given pattern in a random text model, which can be quite general, from simple uniform models to higher-order Markov models or hidden Markov models (HMMs). Furthermore, we provide a technique to compute the exact distribution of \emph{differences} in running time cost of two algorithms. In contrast to previous work, our approach is neither limited to simple text models, nor to asymptotic statements, nor to moment computations such as expectation and variance. Methodically, we use extensions of finite automata which we call deterministic arithmetic automata (DAAs) and probabilistic arithmetic automata (PAAs) [13]. To our knowledge, this is the first time that substring- or suffix-based pattern matching algorithms are analyzed exactly. Experimentally, we compare Horspool's algorithm, Backward DAWG Matching, and Backward Oracle Matching on prototypical patterns of short length and provide statistics on the size of minimal DAAs for these computations.