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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
FastContext: an efficient and scalable implementation of ...
Jianlin Shi, John F. Hurdle · 2019-05-01 · via cs.DS updates on arXiv.org

Objective: To develop and evaluate FastContext, an efficient, scalable implementation of the ConText algorithm suitable for very large-scale clinical natural language processing. Background: The ConText algorithm performs with state-of-art accuracy in detecting the experiencer, negation status, and temporality of concept mentions in clinical narratives. However, the speed limitation of its current implementations hinders its use in big data processing. Methods: We developed FastContext through hashing the ConText's rules, then compared its speed and accuracy with JavaConText and GeneralConText, two widely used Java implementations. Results: FastContext ran two orders of magnitude faster and was less decelerated by rule increase than the other two implementations used in this study for comparison. Additionally, FastContext consistently gained accuracy improvement as the rules increased (the desired outcome of adding new rules), while the other two implementations did not. Conclusions: FastContext is an efficient, scalable implementation of the popular ConText algorithm, suitable for natural language applications on very large clinical corpora.