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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Sparse Suffix Tree Construction in Optimal Time and Space
Paweł Gawrychowski, Tomasz Kociumaka · 2016-08-02 · via cs.DS updates on arXiv.org

Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$ interesting suffixes, which are stored in the so-called sparse suffix tree. Because the size of this structure is $Θ(b)$, it is natural to seek a construction algorithm using only $O(b)$ words of space assuming read-only random access to the text. We design a linear-time Monte Carlo algorithm for this problem, hence resolving an open question explicitly stated by Bille et al. [TALG 2016]. The best previously known algorithm by I et al. [STACS 2014] works in $O(n\log b)$ time. Our solution proceeds in $n/b$ rounds; in the $r$-th round, we consider all suffixes starting at positions congruent to $r$ modulo $n/b$. By maintaining rolling hashes, we lexicographically sort all interesting suffixes starting at such positions, and then we merge them with the already considered suffixes. For efficient merging, we also need to answer LCE queries in small space. By plugging in the structure of Bille et al. [CPM 2015] we obtain $O(n+b\log b)$ time complexity. We improve this structure, which implies a linear-time sparse suffix tree construction algorithm. We complement our Monte Carlo algorithm with a deterministic verification procedure. The verification takes $O(n\sqrt{\log b})$ time, which improves upon the bound of $O(n\log b)$ obtained by I et al. [STACS 2014]. This is obtained by first observing that the pruning done inside the previous solution has a rather clean description using the notion of graph spanners with small multiplicative stretch. Then, we are able to decrease the verification time by applying difference covers twice. Combined with the Monte Carlo algorithm, this gives us an $O(n\sqrt{\log b})$-time and $O(b)$-space Las Vegas algorithm.