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PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
HiPerMotif: Novel Parallel Subgraph Isomorphism in Large-...
Mohammad Dindoost, Oliver Alvarado Rodriguez, Bartosz Bryg, Ioan · 2025-07-06 · via cs.DS updates on arXiv.org

Subgraph isomorphism, essential for pattern detection in large-scale graphs, faces scalability challenges in attribute-rich property graphs used in neuroscience, systems biology, and social network analysis. Traditional algorithms explore search spaces vertex-by-vertex from empty mappings, leading to extensive early-stage exploration with limited pruning opportunities. We introduce HiPerMotif, a novel hybrid parallel algorithm that fundamentally shifts the search initialization strategy. After structurally reordering the pattern graph to prioritize high-degree vertices, HiPerMotif systematically identifies all possible mappings for the first edge (vertices 0,1) in the target graph, validates these edge candidates using efficient vertex and edge validators, and injects the validated partial mappings as states at depth 2. The algorithm then continues with traditional vertex-by-vertex exploration from these pre-validated starting points, effectively pruning the expensive early search tree branches while enabling natural parallelization over edge candidates. Our contributions include the edge-centric initialization paradigm with state injection, a structural reordering strategy achieving up to 5x speedup, rapid edge and vertex validators for attribute-rich graphs, and efficient parallel enumeration over target graph edges. Implemented in the open-source Arachne framework, HiPerMotif achieves up to 66x speedup over state-of-the-art baselines (VF2-PS, VF3P, Glasgow) on diverse datasets where baselines successfully complete execution. Additionally, HiPerMotif successfully processes massive datasets such as the H01 connectome with 147 million edges, which existing methods cannot handle due to memory constraints. Comprehensive evaluation across synthetic and real-world graphs demonstrates HiPerMotif's scalability, enabling advanced analysis in computational neuroscience and beyond.