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PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Weighted Edit Distance Computation: Strings, Trees and Dyck
Debarati Das, Jacob Gilbert, MohammadTaghi Hajiaghayi, Tomasz Ko · 2023-02-09 · via cs.DS updates on arXiv.org

Given two strings of length $n$ over alphabet $Σ$, and an upper bound $k$ on their edit distance, the algorithm of Myers (Algorithmica'86) and Landau and Vishkin (JCSS'88) computes the unweighted string edit distance in $\mathcal{O}(n+k^2)$ time. Till date, it remains the fastest algorithm for exact edit distance computation, and it is optimal under the Strong Exponential Hypothesis (STOC'15). Over the years, this result has inspired many developments, including fast approximation algorithms for string edit distance as well as similar $\tilde{\mathcal{O}}(n+$poly$(k))$-time algorithms for generalizations to tree and Dyck edit distances. Surprisingly, all these results hold only for unweighted instances. While unweighted edit distance is theoretically fundamental, almost all real-world applications require weighted edit distance, where different weights are assigned to different edit operations and may vary with the characters being edited. Given a weight function $w: Σ\cup \{\varepsilon \}\times Σ\cup \{\varepsilon \} \rightarrow \mathbb{R}_{\ge 0}$ (such that $w(a,a)=0$ and $w(a,b)\ge 1$ for all $a,b\in Σ\cup \{\varepsilon\}$ with $a\ne b$), the goal is to find an alignment that minimizes the total weight of edits. Except for the vanilla $\mathcal{O}(n^2)$-time dynamic-programming algorithm and its almost trivial $\mathcal{O}(nk)$-time implementation, none of the aforementioned developments on the unweighted edit distance apply to the weighted variant. In this paper, we propose the first $\mathcal{O}(n+$poly$(k))$-time algorithm that computes weighted string edit distance exactly, thus bridging a fundamental gap between our understanding of unweighted and weighted edit distance. We then generalize this result to weighted tree and Dyck edit distances, which lead to a deterministic algorithm that improves upon the previous work for unweighted tree edit distance.