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PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Approximating the Median under the Ulam Metric
Diptarka Chakraborty, Debarati Das, Robert Krauthgamer · 2020-11-02 · via cs.DS updates on arXiv.org

We study approximation algorithms for variants of the \emph{median string} problem, which asks for a string that minimizes the sum of edit distances from a given set of $m$ strings of length $n$. Only the straightforward $2$-approximation is known for this NP-hard problem. This problem is motivated e.g.~by computational biology, and belongs to the class of median problems (over different metric spaces), which are fundamental tasks in data analysis. Our main result is for the Ulam metric, where all strings are permutations over $[n]$ and each edit operation moves a symbol (deletion plus insertion). We devise for this problem an algorithms that breaks the $2$-approximation barrier, i.e., computes a $(2-δ)$-approximate median permutation for some constant $δ>0$ in time $\tilde{O}(nm^2+n^3)$. We further use these techniques to achieve a $(2-δ)$ approximation for the median string problem in the special case where the median is restricted to length $n$ and the optimal objective is large $Ω(mn)$. We also design an approximation algorithm for the following probabilistic model of the Ulam median: the input consists of $m$ perturbations of an (unknown) permutation $x$, each generated by moving every symbol to a random position with probability (a parameter) $ε>0$. Our algorithm computes with high probability a $(1+o(1/ε))$-approximate median permutation in time $O(mn^2+n^3)$.