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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Partial Data Compression and Text Indexing via Optimal Su...
Gianni Franceschini, Roberto Grossi, S. Muthukrishnan · 2011-10-15 · via cs.DS updates on arXiv.org

Consider an input text string T[1,N] drawn from an unbounded alphabet. We study partial computation in suffix-based problems for Data Compression and Text Indexing such as (I) retrieve any segment of K<=N consecutive symbols from the Burrows-Wheeler transform of T, and (II) retrieve any chunk of K<=N consecutive entries of the Suffix Array or the Suffix Tree. Prior literature would take O(N log N) comparisons (and time) to solve these problems by solving the total problem of building the entire Burrows-Wheeler transform or Text Index for T, and performing a post-processing to single out the wanted portion. We introduce a novel adaptive approach to partial computational problems above, and solve both the partial problems in O(K log K + N) comparisons and time, improving the best known running times of O(N log N) for K=o(N). These partial-computation problems are intimately related since they share a common bottleneck: the suffix multi-selection problem, which is to output the suffixes of rank r_1,r_2,...,r_K under the lexicographic order, where r_1<r_2<...<r_K, r_i in [1,N]. Special cases of this problem are well known: K=N is the suffix sorting problem that is the workhorse in Stringology with hundreds of applications, and K=1 is the recently studied suffix selection. We show that suffix multi-selection can be solved in Theta(N log N - sum_{j=0}^K Delta_j log Delta_j+N) time and comparisons, where r_0=0, r_{K+1}=N+1, and Delta_j=r_{j+1}-r_j for 0<=j<=K. This is asymptotically optimal, and also matches the bound in [Dobkin, Munro, JACM 28(3)] for multi-selection on atomic elements (not suffixes). Matching the bound known for atomic elements for strings is a long running theme and challenge from 70's, which we achieve for the suffix multi-selection problem. The partial suffix problems as well as the suffix multi-selection problem have many applications.