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PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
BH-tsNET, FIt-tsNET, L-tsNET: Fast tsNET Algorithms for L...
Amyra Meidiana, Seok-Hee Hong, Kwan-Liu Ma · 2025-09-24 · via cs.DS updates on arXiv.org

The tsNET algorithm utilizes t-SNE to compute high-quality graph drawings, preserving the neighborhood and clustering structure. We present three fast algorithms for reducing the time complexity of tsNET algorithm from O(nm) time to O(n log n) time and O(n) time. To reduce the runtime of tsNET, there are three components that need to be reduced: (C0) computation of high-dimensional probabilities, (C1) computation of KL divergence gradient, and (C2) entropy computation. Specifically, we reduce the overall runtime of tsNET, integrating our new fast approaches for C0 and C2 with fast t-SNE algorithms for C1. We first present O(n log n)-time BH-tsNET, based on (C0) new O(n)-time partial BFS-based high-dimensional probability computation and (C2) new O(n log n)-time quadtree-based entropy computation, integrated with (C1) O(n log n)-time quadtree-based KL divergence computation of BH-SNE. We next present faster O(n log n)-time FIt-tsNET, using (C0) O(n)-time partial BFS-based high-dimensional probability computation and (C2) quadtree-based O(n log n)-time entropy computation, integrated with (C1) O(n)-time interpolation-based KL divergence computation of FIt-SNE. Finally, we present the O(n)-time L-tsNET, integrating (C2) new O(n)-time FFT-accelerated interpolation-based entropy computation with (C0) O(n)-time partial BFS-based high-dimensional probability computation, and (C1) O(n)-time interpolation-based KL divergence computation of FIt-SNE. Extensive experiments using benchmark data sets confirm that BH-tsNET, FIt-tsNET, and L-tsNET outperform tsNET, running 93.5%, 96%, and 98.6% faster while computing similar quality drawings in terms of quality metrics (neighborhood preservation, stress, edge crossing, and shape-based metrics) and visual comparison. We also present a comparison between our algorithms and DRGraph, another dimension reduction-based graph drawing algorithm.