Structural parameters of graph (such as degeneracy and arboricity) had rarely been considered when designing algorithms for $\textit{(edge) clique cover}$ problems. Taking degeneracy of graph into account, we present a greedy framework and two fixed-parameter tractable algorithms for $\textit{clique cover}$ problems. We introduce a set theoretic concept and demonstrate its use in the computations of different objectives of $\textit{clique cover}$. Furthermore, we show efficacy of our algorithms in practice.