惯性聚合 高效追踪和阅读你感兴趣的博客、新闻、科技资讯
阅读原文 在惯性聚合中打开

推荐订阅源

Google DeepMind News
Google DeepMind News
G
Google Developers Blog
博客园 - 三生石上(FineUI控件)
B
Blog
让小产品的独立变现更简单 - ezindie.com
让小产品的独立变现更简单 - ezindie.com
Hugging Face - Blog
Hugging Face - Blog
C
Check Point Blog
V
V2EX
Vercel News
Vercel News
U
Unit 42
Recent Announcements
Recent Announcements
Last Week in AI
Last Week in AI
J
Java Code Geeks
WordPress大学
WordPress大学
罗磊的独立博客
I
InfoQ
阮一峰的网络日志
阮一峰的网络日志
奇客Solidot–传递最新科技情报
奇客Solidot–传递最新科技情报
小众软件
小众软件
M
MIT News - Artificial intelligence
freeCodeCamp Programming Tutorials: Python, JavaScript, Git & More
Apple Machine Learning Research
Apple Machine Learning Research
Martin Fowler
Martin Fowler
云风的 BLOG
云风的 BLOG

cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Compressing Suffix Trees by Path Decompositions
Ruben Becker, Davide Cenzato, Travis Gagie, Sung-Hwan Kim, Ragna · 2025-06-18 · via cs.DS updates on arXiv.org

The suffix tree is arguably the most fundamental data structure on strings: introduced by Weiner (SWAT 1973) and McCreight (JACM 1976), it allows solving a myriad of computational problems on strings in linear time. Motivated by its large space usage, subsequent research focused first on reducing its size by a constant factor via Suffix Arrays, and later on reaching space proportional to the size of the compressed string. Modern compressed indexes, such as the $r$-index (Gagie et al., SODA 2018), fit in space proportional to $r$, the number of runs in the Burrows-Wheeler transform (a strong and universal repetitiveness measure). These advances, however, came with a price: while modern compressed indexes boast optimal bounds in the RAM model, they are often orders of magnitude slower than uncompressed counterparts in practice due to catastrophic cache locality. This reality gap highlights that Big-O complexity in the RAM model has become a misleading predictor of real-world performance, leaving a critical question unanswered: can we design compressed indexes that are efficient in the I/O model of computation? We answer this in the affirmative by introducing a new Suffix Array sampling technique based on particular path decompositions of the suffix tree. We prove that sorting the suffix tree leaves by specific priority functions induces a decomposition where the number of distinct paths (each corresponding to a string suffix) is bounded by $r$. This allows us to solve indexed pattern matching efficiently in the I/O model using a Suffix Array sample of size at most $r$, strictly improving upon the (tight) $2r$ bound of Suffixient Arrays, another recent compressed Suffix Array sampling technique.