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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Self-Index based on LZ77 (thesis)
2011-12-20 · via cs.DS updates on arXiv.org

Domains like bioinformatics, version control systems, collaborative editing systems (wiki), and others, are producing huge data collections that are very repetitive. That is, there are few differences between the elements of the collection. This fact makes the compressibility of the collection extremely high. For example, a collection with all different versions of a Wikipedia article can be compressed up to the 0.1% of its original space, using the Lempel-Ziv 1977 (LZ77) compression scheme. Many of these repetitive collections handle huge amounts of text data. For that reason, we require a method to store them efficiently, while providing the ability to operate on them. The most common operations are the extraction of random portions of the collection and the search for all the occurrences of a given pattern inside the whole collection. A self-index is a data structure that stores a text in compressed form and allows to find the occurrences of a pattern efficiently. On the other hand, self-indexes can extract any substring of the collection, hence they are able to replace the original text. One of the main goals when using these indexes is to store them within main memory. In this thesis we present a scheme for random text extraction from text compressed with a Lempel-Ziv parsing. Additionally, we present a variant of LZ77, called LZ-End, that efficiently extracts text using space close to that of LZ77. The main contribution of this thesis is the first self-index based on LZ77/LZ-End and oriented to repetitive texts, which outperforms the state of the art (the RLCSA self-index) in many aspects. Finally, we present a corpus of repetitive texts, coming from several application domains. We aim at providing a standard set of texts for research and experimentation, hence this corpus is publicly available.