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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Sublinear-Time Algorithms for Computing & Embedding G...
Tomasz Kociumaka, Barna Saha · 2020-07-25 · via cs.DS updates on arXiv.org

In this paper, we design new sublinear-time algorithms for solving the gap edit distance problem and for embedding edit distance to Hamming distance. For the gap edit distance problem, we give an $\tilde{O}(\frac{n}{k}+k^2)$-time greedy algorithm that distinguishes between length-$n$ input strings with edit distance at most $k$ and those with edit distance exceeding $(3k+5)k$. This is an improvement and a simplification upon the result of Goldenberg, Krauthgamer, and Saha [FOCS 2019], where the $k$ vs $Θ(k^2)$ gap edit distance problem is solved in $\tilde{O}(\frac{n}{k}+k^3)$ time. We further generalize our result to solve the $k$ vs $k'$ gap edit distance problem in time $\tilde{O}(\frac{nk}{k'}+k^2+ \frac{k^2}{k'}\sqrt{nk})$, strictly improving upon the previously known bound $\tilde{O}(\frac{nk}{k'}+k^3)$. Finally, we show that if the input strings do not have long highly periodic substrings, then already the $k$ vs $(1+ε)k$ gap edit distance problem can be solved in sublinear time. Specifically, if the strings contain no substring of length $\ell$ with period at most $2k$, then the running time we achieve is $\tilde{O}(\frac{n}{ε^2 k}+k^2\ell)$. We further give the first sublinear-time probabilistic embedding of edit distance to Hamming distance. For any parameter $p$, our $\tilde{O}(\frac{n}{p})$-time procedure yields an embedding with distortion $O(kp)$, where $k$ is the edit distance of the original strings. Specifically, the Hamming distance of the resultant strings is between $\frac{k-p+1}{p+1}$ and $O(k^2)$ with good probability. This generalizes the linear-time embedding of Chakraborty, Goldenberg, and Koucký [STOC 2016], where the resultant Hamming distance is between $\frac k2$ and $O(k^2)$. Our algorithm is based on a random walk over samples, which we believe will find other applications in sublinear-time algorithms.