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PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Perfect phylogenies via the Minimum Uncovering Branching ...
Narmina Baghirova, Esther Galby, Martin Milanič · 2025-06-23 · via cs.DS updates on arXiv.org

In this paper, we present new efficiently solvable cases of the Minimum Uncovering Branching problem, an optimization problem with applications in cancer genomics introduced by Hujdurović, Husić, Milanič, Rizzi, and Tomescu in 2018. The problem involves a family of finite sets, and the goal is to map each non-maximal set to exactly one set that contains it, minimizing the sum of uncovered elements across all sets in the family. Hujdurović et al. formulated the problem in terms of branchings of the digraph formed by the proper set inclusion relation on the input sets and studied the problem complexity based on properties of the corresponding partially ordered set, in particular, with respect to its height and width, defined respectively as the maximum cardinality of a chain and an antichain. They showed that the problem is APX-complete for instances of bounded height and that a constant-factor approximation algorithm exists for instances of bounded width, but left the exact complexity for bounded-width instances open. In this paper, we answer this question by proving that the problem is solvable in polynomial time. We derive this result by examining the structural properties of optimal solutions and reducing the problem to computing maximum matchings in bipartite graphs and maximum weight antichains in partially ordered sets. We also introduce a new polynomially computable lower bound and identify another condition for polynomial-time solvability.