The Job Shop Scheduling Problem (JSSP) is commonly formulated as a disjunctive graph in which nodes represent operations and edges encode technological precedence constraints as well as machine-sharing conflicts. Most existing reinforcement learning approaches model this graph as homogeneous, merging job-precedence and machine-contention edges into a single relation type. Such a simplification overlooks the intrinsic heterogeneity of the problem structure and may lead to the loss of critical relational information. To address this limitation, we propose the Heterogeneous Graph Transformer (HGT)-Scheduler, a reinforcement learning framework that models the JSSP as a heterogeneous graph. The proposed architecture leverages a Heterogeneous Graph Transformer to capture type-specific relational patterns through edge-type-dependent attention mechanisms applied to precedence and contention relations. The scheduling policy is trained using Proximal Policy Optimization. The effectiveness of the proposed method is evaluated on the Fisher--Thompson benchmark instances. On the FT06 instance, the HGT-Scheduler achieves an optimality gap of 8.4\%, statistically outperforming both an identical architecture that ignores edge types ($p = 0.011$) and a standard Graph Isomorphism Network baseline. On the larger FT10 instance, the approach demonstrates favorable scalability. However, under a 50,000-step training limit, the performance of heterogeneous and homogeneous graph models is comparable, suggesting that edge-type awareness requires longer training horizons for larger problem instances. Ablation analyses further indicate that a three-layer attention architecture provides the best performance. Overall, the results confirm that explicitly modeling distinct edge semantics improves the learning of effective scheduling policies.