Conventional direction-of-arrival (DoA) estimation methods rely on multi-antenna arrays, which are costly to implement on size-constrained Bluetooth Low Energy (BLE) devices. Virtual antenna array (VAA) techniques enable DoA estimation with a single antenna, making angle estimation feasible on such devices. However, BLE only provides a single-shot two-way channel frequency response (CFR) with a binary phase ambiguity issue, which hinders the direct application of VAA. To address this challenge, we propose a unified model that combines VAA with BLE two-way CFR, and introduce a neural network based phase recovery framework that employs row / column predictors with a voting mechanism to resolve the ambiguity. The recovered one-way CFR then enables super resolution algorithms such as MUSIC for joint time of arrival (ToA) and DoA estimation. Simulation results demonstrate that the proposed method achieves superior performance under non-uniform VAAs, with mean square errors approaching the Cramer Rao bound at SNR $\geq$ 5 dB.