Whittle-Matérn fields are a recently introduced class of Gaussian processes on metric graphs, which are specified as solutions to a fractional-order stochastic differential equation. Unlike earlier covariance-based approaches for specifying Gaussian fields on metric graphs, the Whittle-Matérn fields are well-defined for any compact metric graph and can provide Gaussian processes with differentiable sample paths. We derive the main statistical properties of the model class, particularly the consistency and asymptotic normality of maximum likelihood estimators of model parameters and the necessary and sufficient conditions for asymptotic optimality properties of linear prediction based on the model with misspecified parameters. The covariance function of the Whittle-Matérn fields is generally unavailable in closed form, and they have therefore been challenging to use for statistical inference. However, we show that for specific values of the fractional exponent, when the fields have Markov properties, likelihood-based inference and spatial prediction can be performed exactly and computationally efficiently. This facilitates using the Whittle-Matérn fields in statistical applications involving big datasets without the need for any approximations. The methods are illustrated via an application to modeling of traffic data, where allowing for differentiable processes dramatically improves the results.