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Complement Submodular Information Measures for Balanced and Robust Data Selection A Proof of a Conjecture on Positive and Negative Square Energies of Unicyclic Graphs Laplacian Spectrum of the Weakly Zero-Divisor Graph of a Finite Commutative Ring An identity for second Eulerian numbers via lattice-point counting $t$-tone edge coloring of graphs Constructing Maximal Bumpless Pipedreams for Double Grothendieck Polynomials Mubayi's Polynomial-Ideal Conjecture and Cover-Ideal Turán Methods Implicit Binarization via Complex Phase Dynamics in Combinatorial Optimization The limits of Schur multipliers in Pólya conversion problems for the $q$-permanent function Universality theorems for generalized splines Framing Triangulations for Arbitrary Integer Flow Polytopes On the Common Generalization of Gentle Algebras and Framed Directed Acyclic Graphs The complexity of frugal digraph homomorphisms Chaotic and periodic behavior of jeu de taquin on infinite Young tableaux Enumerating Pattern Avoiding Parking Functions Incidence toric ideals and three-point functions Unique Winning Opening Move in Three-Row Chomp Strong majority colorings of graphs A Balancing Theorem for Spanning Trees of Rectangular Grid Graphs Spectral radius and edge-disjoint connected factors of graphs New invariants for rank metric codes, with applications to the classification of rank two semifields of order 256 Flexible DP-4-coloring of planar graphs without 4-cycles and intersecting triangles Balanced intersection size distributions in projective planes List Reconstruction Problem with List Size Two Is Dimensionality a Barrier for Retrieval Models? The INIEP: Irreducible and Positive Realizations The number of Pfaffian orientations on punctured polygonally cellulated surfaces Explicit Construction of Polytopes whose Ehrhart Polynomials Realize any Given Sign Pattern Finite-state enumeration of adjacency-constrained 132-avoiding permutations AMDS and quantum AMDS Constacyclic codes of length $4p^ς$ over $\mathbb{F}_{{p}^{m}}$
Constrained coding upper bounds via Goulden-Jackson clust...
Yuanting Shen, Chong Shangguan, Zhicong Lin, Gennian Ge · 2024-07-23 · via math.CO updates on arXiv.org

Motivated by applications in DNA-based data storage, constrained codes have attracted a considerable amount of attention from both academia and industry. We study the maximum cardinality of constrained codes for which the constraints can be characterized by a set of forbidden substrings, where by a substring we mean some consecutive coordinates in a string. For finite-type constrained codes (for which the set of forbidden substrings is finite), one can compute their capacity (code rate) by the ``spectral method'', i.e., by applying the Perron-Frobenious theorem to the de Brujin graph defined by the code. However, there was no systematic method to compute the exact cardinality of these codes. We show that there is a surprisingly powerful method arising from enumerative combinatorics, which is based on the Goulden-Jackson cluster theorem (previously not known to the coding community), that can be used to compute not only the capacity, but also the exact formula for the cardinality of these codes, for each fixed code length. Moreover, this can be done by solving a system of linear equations of size equal to the number of constraints. We also show that the spectral method and the cluster method are inherently related by establishing a direct connection between the spectral radius of the de Brujin graph used in the first method and the convergence radius of the generating function used in the second method. Lastly, to demonstrate the flexibility of the new method, we use it to give an explicit upper bound on the maximum cardinality of variable-length non-overlapping codes, which are a class of constrained codes defined by an infinite number of forbidden substrings.