In many applications of multi-microphone multi-device processing, the synchronization among different input channels can be affected by the lack of a common clock and isolated drops of samples. In this work, we address the issue of sample drop detection in the context of a conversational speech scenario, recorded by a set of microphones distributed in space. The goal is to design a neural-based model that given a short window in the time domain, detects whether one or more devices have been subjected to a sample drop event. The candidate time windows are selected from a set of large time intervals, possibly including a sample drop, and by using a preprocessing step. The latter is based on the application of normalized cross-correlation between signals acquired by different devices. The architecture of the neural network relies on a CNN-LSTM encoder, followed by multi-head attention. The experiments are conducted using both artificial and real data. Our proposed approach obtained F1 score of 88% on an evaluation set extracted from the CHiME-5 corpus. A comparable performance was found in a larger set of experiments conducted on a set of multi-channel artificial scenes.