Autonomous aerial navigation in dense natural environments remains challenging due to limited visibility, thin and irregular obstacles, GNSS-denied operation, and frequent perceptual degradation. This work presents an improved deep learning-based navigation framework that integrates semantically enhanced depth encoding with neural motion-primitive evaluation for robust flight in cluttered forests. Several modules are incorporated on top of the original sevae-ORACLE algorithm to address limitations observed during real-world deployment, including lateral control for sharper maneuvering, a temporal consistency mechanism to suppress oscillatory planning decisions, a stereo-based visual-inertial odometry solution for drift-resilient state estimation, and a supervisory safety layer that filters unsafe actions in real time. A depth refinement stage is included to improve the representation of thin branches and reduce stereo noise, while GPU optimization increases onboard inference throughput from 4 Hz to 10 Hz. The proposed approach is evaluated against several existing learning-based navigation methods under identical environmental conditions and hardware constraints. It demonstrates higher success rates, more stable trajectories, and improved collision avoidance, particularly in highly cluttered forest settings. The system is deployed on a custom quadrotor in three boreal forest environments, achieving fully autonomous completion in all flights in moderate and dense clutter, and 12 out of 15 flights in highly dense underbrush. These results demonstrate improved reliability and safety over existing navigation methods in complex natural environments.