Social robot navigation can be helpful in various contexts of daily life but requires safe human-robot interactions and efficient trajectory planning. While modeling pairwise relations has been widely studied in multi-agent interacting systems, the ability to capture larger-scale group-wise activities is limited. In this paper, we propose a systematic relational reasoning approach with explicit inference of the underlying dynamically evolving relational structures, and we demonstrate its effectiveness for multi-agent trajectory prediction and social robot navigation. In addition to the edges between pairs of nodes (i.e., agents), we propose to infer hyperedges that adaptively connect multiple nodes to enable group-wise reasoning in an unsupervised manner. Our approach infers dynamically evolving relation graphs and hypergraphs to capture the evolution of relations, which the trajectory predictor employs to generate future states. Meanwhile, we propose to regularize the sharpness and sparsity of the learned relations and the smoothness of the relation evolution, which proves to enhance training stability and model performance. The proposed approach is validated on synthetic crowd simulations and real-world benchmark datasets. Experiments demonstrate that the approach infers reasonable relations and achieves state-of-the-art prediction performance. In addition, we present a deep reinforcement learning (DRL) framework for social robot navigation, which incorporates relational reasoning and trajectory prediction systematically. In a group-based crowd simulation, our method outperforms the strongest baseline by a significant margin in terms of safety, efficiency, and social compliance in dense, interactive scenarios. We also demonstrate the practical applicability of our method with real-world robot experiments. The code and videos can be found at https://relational-reasoning-nav.github.io/.