We present ECToNAS, a cost-efficient evolutionary cross-topology neural architecture search algorithm that does not require any pre-trained meta controllers. Our framework is able to select suitable network architectures for different tasks and hyperparameter settings, independently performing cross-topology optimisation where required. It is a hybrid approach that fuses training and topology optimisation together into one lightweight, resource-friendly process. We demonstrate the validity and power of this approach with six standard data sets (CIFAR-10, CIFAR-100, EuroSAT, Fashion MNIST, MNIST, SVHN), showcasing the algorithm's ability to not only optimise the topology within an architectural type, but also to dynamically add and remove convolutional cells when and where required, thus crossing boundaries between different network types. This enables researchers without a background in machine learning to make use of appropriate model types and topologies and to apply machine learning methods in their domains, with a computationally cheap, easy-to-use cross-topology neural architecture search framework that fully encapsulates the topology optimisation within the training process.