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Unit 42

Cheriton School of Computer Science

Master's Thesis Presentation • Computer Graphics • VR GAViewer: Immersive Visualisation and Direct Manipulation of the Conformal Model in Virtual Reality | Cheriton School of Computer Science | University of Waterloo Seminar • Algorithms and Complexity • Lower Bounds for Private Optimization Via Reconstruction Attacks | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Data Systems • Efficient Oblivious Query Processing for Property Graph Databases | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Artificial Intelligence | Machine Learning • Inferred Author Gender as a Variable Affecting LLM Behaviour | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Bioinformatics • From Candidates to Evidence: Diagnostics for Trustworthy Biological Discovery | Cheriton School of Computer Science | University of Waterloo PhD Defence • Algorithms and Complexity • Graph Property Testing and the Container Method | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Software Engineering • An Empirical Study of Transitive Vulnerability Exposure in PyPI | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Human–Computer Interaction • The Design and Development of a Virtual Patient System for Medical Education | Cheriton School of Computer Science | University of Waterloo PhD Seminar • Software Engineering • Decoupling CLI Agent Scaffolding to Internalize Planning Across Scaffolds | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Algorithms and Complexity • On the Black-Box Impossibility of Hardness in TFNP from One-Way Functions | Cheriton School of Computer Science | University of Waterloo Seminar • Algorithms and Complexity • Geometric Distances for Curves and Graphs: From Matching to Simplification | Cheriton School of Computer Science | University of Waterloo PhD Defence • Computer Algebra | Symbolic Computation • On the Effective Algebraic Geometry of Determinantal Varieties | Cheriton School of Computer Science | University of Waterloo Seminar • Algorithms and Complexity • Computing with Full Memory in 2026 | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Algorithms and Complexity • Bipartite Density: From Mixing Time to Local Algorithms for Dense Subgraphs | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Cryptography, Security, and Privacy (CrySP) • Upgrading Security Properties for Updatable Public-Key Encryption through Modular Transformations | Cheriton School of Computer Science | University of Waterloo PhD Seminar • Programming Languages • The Defensive Tax: Price of Defenses That Never Defend | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Algorithms and Complexity • Algorithms for Analytic Combinatorics: Positivity Bounds and D-finite Operators | Cheriton School of Computer Science | University of Waterloo PhD Seminar • Cryptography, Security, and Privacy (CrySP) • IPFSCover: Examining Website Fingerprinting Threats in the InterPlanetary File System | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Programming Languages • Reified Generic Types for Scala 3 on the JVM | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Artificial Intelligence | Machine Learning • Abstract Reasoning with Vector Symbolic Algebras | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Artificial Intelligence | Machine Learning • Learning at Test Time: Adapting Models with Synthetic Data and Environment Interaction | Cheriton School of Computer Science | University of Waterloo Master’s Thesis Presentation • Systems and Networking • Runtime Configuration of GPU Workloads for Energy-efficient Execution | Cheriton School of Computer Science | University of Waterloo PhD Seminar • Artificial Intelligence | Machine Learning • Beyond Semantic Similarity: Direct Corpus Interaction for Agentic Search | Cheriton School of Computer Science | University of Waterloo PhD Seminar • Artificial Intelligence | Machine Learning • OpenResearcher: Reproducible Training for Long-Horizon Deep Research Agents | Cheriton School of Computer Science | University of Waterloo PhD Seminar • Software Engineering • SLA-Awareness for AI-assisted coding | Cheriton School of Computer Science | University of Waterloo PhD Seminar • Software Engineering • Context-Aware CodeLLM Eviction for AI-assisted Coding | Cheriton School of Computer Science | University of Waterloo PhD Seminar • Bioinformatics • Recurrent Energy-Based Modeling of Side-Chain Allostery | Cheriton School of Computer Science | University of Waterloo Seminar • Bioinformatics | Artificial Intelligence • Advancing Drug Discovery with FAIR Data and Explainable AI in Biomedical Research | Cheriton School of Computer Science | University of Waterloo PhD Defence • Artificial Intelligence | Machine Learning | Bioinformatics • Generative Synthetic Data for Pre-Clinical Drug Discovery | Cheriton School of Computer Science | University of Waterloo PhD Defence • Human–Computer Interaction • Tangible World-in-Miniature Interaction in Virtual Reality | Cheriton School of Computer Science | University of Waterloo
PhD Seminar • Formal Methods • Counterexample Guided Abst...
Mayuri Punithan · 2026-07-28 · via Cheriton School of Computer Science

Please note: This PhD seminar will take place in DC 2564.

Aditya Shankar Narayanan, PhD candidate
David R. Cheriton School of Computer Science

Supervisor: Professor Nancy Day

Declarative modelling languages, such as Dash and Alloy, allow the user to describe the behaviour of a system abstractly and concisely.
Dash provides the user with the syntax and semantics to specify transition systems using control state hierarchy, transition guards and actions on dynamic variables and trigger events. Dash uses Alloy expressions to specify formulas in the initial conditions, invariants, guards, and actions of the model. Dynamic variables and formulas are modelled using Alloy constructs such as sets and relations. Model checking of Dash models is done by translating the model into Alloy and using the Alloy Analyzer to perform symbolic, bounded model checking for finite scopes. The use of sets and relations in a model greatly contributes to the state space explosion problem. Thus, exploring the entire reachable state space of a model in the Alloy Analyzer is rarely possible.

One of the leading strategies to address the state space explosion problem is Counterexample Guided Abstraction and Refinement (CEGAR). In this seminar, we investigate how the CEGAR framework can be used for bounded model checking of Dash models. Our goal in using CEGAR is to explore more of the reachable state space of the original/concrete model and/or perform bounded model checking at higher scopes than possible with the concrete model. We construct an abstract, conservative model that replaces all concrete model variables (sets and relations) with Boolean variables, thereby creating a smaller model to model check.

However, there are many options for how to use the general principles of CEGAR. The main challenges in our approach are choosing the predicates to construct the abstract model, abstracting the guards and actions of transitions, reducing counterexample validation in the concrete model to take less time than concrete model checking by itself, and minimizing the number of refinement loops needed for the CEGAR loop to terminate.

Our key contributions begin by recognizing that the user abstractions of control states and transitions in Dash by themselves partition the state space of the model into equivalence classes. We can utilize this partition directly in constructing a conservative abstraction of the original model, which puts very useful reachability constraints on the abstract model. Next, we present and evaluate different schemes that vary the choice of predicates over the dynamic variables for the initial abstraction, vary how conservatively we abstract the transition guards and actions, and reduce the counterexample validation and refinement process. We compare the different schemes based on how efficient each scheme is in exploring longer traces in the reachable state space, and traces of a model with large scopes for signatures.