Change monitoring is an essential task for cranberry farming as it provides both breeders and growers with the ability to analyze growth, predict yield, and make treatment decisions. However, this task is often done manually, requiring significant time on the part of a cranberry grower or breeder. Deep learning based change monitoring holds promise, despite the caveat of hard-to-interpret high dimensional features and hand-annotations for fine-tuning. To address this gap, we introduce a method for modeling crop growth based on fine-tuning vision transformers (ViTs) using a self-supervised approach that avoids tedious image annotations. We use a two-fold pretext task (time regression and class prediction) to learn a latent space for the time-lapse evolution of plant and fruit appearance. The resulting 2D temporal tracks provide an interpretable time-series model of crop growth that can be used to: 1) predict growth over time and 2) distinguish temporal differences of cranberry varieties. We also provide a novel time-lapse dataset of cranberry fruit featuring eight distinct varieties, observed 52 times over the growing season (span of around four months), annotated with information about fungicide application, yield, and rot. Our approach is general and can be applied to other crops and applications (code and dataset can be found at https://github. com/ronan-39/tlt/).