Nutrition estimation is an important component of promoting healthy eating and mitigating diet-related health risks. Despite advances in tasks such as food classification and ingredient recognition, progress in nutrition estimation is limited due to the lack of datasets with nutritional annotations. To address this issue, we introduce FastFood, a dataset with 84,446 images across 908 fast food categories, featuring ingredient and nutritional annotations. In addition, we propose a new model-agnostic Visual-Ingredient Feature Fusion (VIF$^2$) method to enhance nutrition estimation by integrating visual and ingredient features. Ingredient robustness is improved through synonym replacement and resampling strategies during training. The ingredient-aware visual feature fusion module combines ingredient features and visual representation to achieve accurate nutritional prediction. During testing, ingredient predictions are refined using large multimodal models by data augmentation and majority voting. Our experiments on both FastFood and Nutrition5k datasets validate the effectiveness of our proposed method built in different backbones (e.g., Resnet, InceptionV3 and ViT), which demonstrates the importance of ingredient information in nutrition estimation. https://huiyanqi.github.io/fastfood-nutrition-estimation/.