Direct Alignment Algorithms (DAAs), such as Direct Preference Optimization (DPO) and Simple Preference Optimization (SimPO), have emerged as efficient alternatives to Reinforcement Learning from Human Feedback (RLHF) algorithms for aligning large language models (LLMs) with human preferences. However, DAAs suffer from a fundamental limitation we identify as the "reward-generation gap", a discrepancy between training objectives and autoregressive decoding dynamics. In this paper, we consider that one contributor to the reward-generation gap is the mismatch between the inherent importance of prefix tokens during the LLM generation process and how this importance is reflected in the implicit reward functions of DAAs. To bridge the gap, we adopt a token-level MDP perspective of DAAs to analyze its limitations and introduce a simple yet effective approach called Prefix-Oriented Equal-length Training (POET), which truncates both preferred and dispreferred responses to match the shorter one's length. We conduct experiments with DPO and SimPO, two representative DAAs, demonstrating that POET improves over their standard implementations, achieving up to 11.8 points in AlpacaEval 2 and overall improvements across downstream tasks. These results underscore the need to mitigate the reward-generation gap in DAAs by better aligning training objectives with autoregressive decoding dynamics.