In recent years, Channel State Information (CSI), recognized for its fine-grained spatial characteristics, has attracted increasing attention in WiFi-based indoor localization. However, despite its potential, CSI-based approaches have yet to achieve the same level of deployment scale and commercialization as those based on Received Signal Strength Indicator (RSSI). A key limitation lies in the fact that most existing CSI-based systems are developed and evaluated in controlled, small-scale environments, limiting their generalizability. To bridge this gap, we explore the deployment of a large-scale CSI-based localization system involving over 400 Access Points (APs) in a real-world building under the Integrated Sensing and Communication (ISAC) paradigm. We highlight two critical yet often overlooked factors: the underutilization of unlabeled data and the inherent heterogeneity of CSI measurements. To address these challenges, we propose a novel CSI-based learning framework for WiFi localization, tailored for large-scale ISAC deployments on the server side. Specifically, we employ a novel graph-based structure to model heterogeneous CSI data and reduce redundancy. We further design a pretext pretraining task that incorporates spatial and temporal priors to effectively leverage large-scale unlabeled CSI data. Complementarily, we introduce a confidence-aware fine-tuning strategy to enhance the robustness of localization results. In a leave-one-smartphone-out experiment spanning five floors and 25, 600 m2, we achieve a median localization error of 2.17 meters and a floor accuracy of 99.49%. This performance corresponds to an 18.7% reduction in mean absolute error (MAE) compared to the best-performing baseline.