In the $k$-Disjoint Shortest Paths ($k$-DSP) problem, we are given a weighted graph $G$ on $n$ nodes and $m$ edges with specified source vertices $s_1, \dots, s_k$, and target vertices $t_1, \dots, t_k$, and are tasked with determining if $G$ contains vertex-disjoint $(s_i,t_i)$-shortest paths. For any constant $k$, it is known that $k$-DSP can be solved in polynomial time over undirected graphs and directed acyclic graphs (DAGs). However, the exact time complexity of $k$-DSP remains mysterious, with large gaps between the fastest known algorithms and best conditional lower bounds. In this paper, we obtain faster algorithms for important cases of $k$-DSP, and present better conditional lower bounds for $k$-DSP and its variants. Previous work solved 2-DSP over weighted undirected graphs in $O(n^7)$ time, and weighted DAGs in $O(mn)$ time. For the main result of this paper, we present linear time algorithms for solving 2-DSP on weighted undirected graphs and DAGs. Our algorithms are algebraic however, and so only solve the detection rather than search version of 2-DSP. For lower bounds, prior work implied that $k$-Clique can be reduced to $2k$-DSP in DAGs and undirected graphs with $O((kn)^2)$ nodes. We improve this reduction, by showing how to reduce from $k$-Clique to $k$-DSP in DAGs and undirected graphs with $O((kn)^2)$ nodes. A variant of $k$-DSP is the $k$-Disjoint Paths ($k$-DP) problem, where the solution paths no longer need to be shortest paths. Previous work reduced from $k$-Clique to $p$-DP in DAGs with $O(kn)$ nodes, for $p= k + k(k-1)/2$. We improve this by showing a reduction from $k$-Clique to $p$-DP, for $p=k + \lfloor k^2/4\rfloor$. Under the $k$-Clique Hypothesis from fine-grained complexity, our results establish better conditional lower bounds for $k$-DSP for all $k\ge 4$, and better conditional lower bounds for $p$-DP for all $p\le 4031$.