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PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
A Simple and Efficient Algorithm for Sorting Signed Permu...
Krister M. Swenson · 2024-03-29 · via cs.DS updates on arXiv.org

In 1937, biologists Sturtevant and Tan posed a computational question: transform a chromosome represented by a permutation of genes, into a second permutation, using a minimum-length sequence of reversals, each inverting the order of a contiguous subset of elements. Solutions to this problem, applied to Drosophila chromosomes, were computed by hand. The first algorithmic result was a heuristic that was published in 1982. In the 1990s a more biologically relevant version of the problem, where the elements have signs that are also inverted by a reversal, finally received serious attention by the computer science community. This effort eventually resulted in the first polynomial time algorithm for Signed Sorting by Reversals. Since then, a dozen more articles have been dedicated to simplifying the theory and developing algorithms with improved running times. The current best algorithm, which runs in $O(n \log^2 n / \log\log n)$ time, fails to meet what some consider to be the likely lower bound of $O(n \log n)$. In this article, we present the first algorithm that runs in $O(n \log n)$ time in the worst case. The algorithm is fairly simple to implement, and the running time hides very low constants.