In this work, we study the problem of approximating the distance to subsequence-freeness in the sample-based distribution-free model. For a given subsequence (word) $w = w_1 \dots w_k$, a sequence (text) $T = t_1 \dots t_n$ is said to contain $w$ if there exist indices $1 \leq i_1 < \dots < i_k \leq n$ such that $t_{i_{j}} = w_j$ for every $1 \leq j \leq k$. Otherwise, $T$ is $w$-free. Ron and Rosin (ACM TOCT 2022) showed that the number of samples both necessary and sufficient for one-sided error testing of subsequence-freeness in the sample-based distribution-free model is $Θ(k/ε)$. Denoting by $Δ(T,w,p)$ the distance of $T$ to $w$-freeness under a distribution $p :[n]\to [0,1]$, we are interested in obtaining an estimate $\widehatΔ$, such that $|\widehatΔ - Δ(T,w,p)| \leq δ$ with probability at least $2/3$, for a given distance parameter $δ$. Our main result is an algorithm whose sample complexity is $\tilde{O}(k^2/δ^2)$. We first present an algorithm that works when the underlying distribution $p$ is uniform, and then show how it can be modified to work for any (unknown) distribution $p$. We also show that a quadratic dependence on $1/δ$ is necessary.