惯性聚合 高效追踪和阅读你感兴趣的博客、新闻、科技资讯
阅读原文 在惯性聚合中打开

推荐订阅源

量子位
Stack Overflow Blog
Stack Overflow Blog
人人都是产品经理
人人都是产品经理
The GitHub Blog
The GitHub Blog
Engineering at Meta
Engineering at Meta
Vercel News
Vercel News
奇客Solidot–传递最新科技情报
奇客Solidot–传递最新科技情报
Y
Y Combinator Blog
The Cloudflare Blog
Last Week in AI
Last Week in AI
B
Blog
钛媒体:引领未来商业与生活新知
钛媒体:引领未来商业与生活新知
T
Tailwind CSS Blog
V
Visual Studio Blog
博客园 - 三生石上(FineUI控件)
小众软件
小众软件
Google DeepMind News
Google DeepMind News
D
DataBreaches.Net
博客园 - 司徒正美
B
Blog RSS Feed
Microsoft Azure Blog
Microsoft Azure Blog
罗磊的独立博客
Hugging Face - Blog
Hugging Face - Blog
L
LangChain Blog

cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
String Sampling with Bidirectional String Anchors
Grigorios Loukides, Solon P. Pissis, Michelle Sweering · 2021-12-20 · via cs.DS updates on arXiv.org

The minimizers sampling mechanism is a popular mechanism for string sampling introduced independently by Schleimer et al. [SIGMOD 2003] and by Roberts et al. [Bioinf. 2004]. Given two positive integers $w$ and $k$, it selects the lexicographically smallest length-$k$ substring in every fragment of $w$ consecutive length-$k$ substrings (in every sliding window of length $w + k - 1$). Minimizers samples are approximately uniform, locally consistent, and computable in linear time. Two main disadvantages of minimizers sampling mechanisms are: first, they do not have good guarantees on the expected size of their samples for every combination of $w$ and $k$; and, second, indexes that are constructed over their samples do not have good worst-case guarantees for on-line pattern searches. We introduce bidirectional string anchors (bd-anchors), a new string sampling mechanism. Given a positive integer $\ell$, our mechanism selects the lexicographically smallest rotation in every length-$\ell$ fragment (in every sliding window of length $\ell$). We show that bd-anchors samples are also approximately uniform, locally consistent, and computable in linear time. In addition, our experiments using several datasets demonstrate that the bd-anchors sample sizes decrease proportionally to $\ell$; and that these sizes are competitive to or smaller than the minimizers sample sizes using the analogous sampling parameters. We provide theoretical justification for these results by analyzing the expected size of bd-anchors samples. As a negative result, we show that computing a total order $\leq$ on the input alphabet, which minimizes the bd-anchors sample size, is NP-hard. We also show that by using any bd-anchors sample, we can construct, in near-linear time, an index which requires linear (extra) space in the size of the sample and answers on-line pattern searches in near-optimal time.