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PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Graphettes: Constant-time determination of graphlet and o...
Adib Hassan, Po-Chien Chung, Wayne B. Hayes · 2017-08-15 · via cs.DS updates on arXiv.org

Graphlets are small connected induced subgraphs of a larger graph $G$. Graphlets are now commonly used to quantify local and global topology of networks in the field. Methods exist to exhaustively enumerate all graphlets (and their orbits) in large networks as efficiently as possible using orbit counting equations. However, the number of graphlets in $G$ is exponential in both the number of nodes and edges in $G$. Enumerating them all is already unacceptably expensive on existing large networks, and the problem will only get worse as networks continue to grow in size and density. Here we introduce an efficient method designed to aid statistical sampling of graphlets up to size $k=8$ from a large network. We define graphettes as the generalization of graphlets allowing for disconnected graphlets. Given a particular (undirected) graphette $g$, we introduce the idea of the canonical graphette $\mathcal K(g)$ as a representative member of the isomorphism group $Iso(g)$ of $g$. We compute the mapping $\mathcal K$, in the form of a lookup table, from all $2^{k(k-1)/2}$ undirected graphettes $g$ of size $k\le 8$ to their canonical representatives $\mathcal K(g)$, as well as the permutation that transforms $g$ to $\mathcal K(g)$. We also compute all automorphism orbits for each canonical graphette. Thus, given any $k\le 8$ nodes in a graph $G$, we can in constant time infer which graphette it is, as well as which orbit each of the $k$ nodes belongs to. Sampling a large number $N$ of such $k$-sets of nodes provides an approximation of both the distribution of graphlets and orbits across $G$, and the orbit degree vector at each node.