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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Linear time construction of compressed text indices in co...
Djamal Belazzougui · 2014-01-06 · via cs.DS updates on arXiv.org

We show that the compressed suffix array and the compressed suffix tree for a string of length $n$ over an integer alphabet of size $σ\leq n$ can both be built in $O(n)$ (randomized) time using only $O(n\logσ)$ bits of working space. The previously fastest construction algorithms that used $O(n\logσ)$ bits of space took times $O(n\log\logσ)$ and $O(n\log^εn)$ respectively (where $ε$ is any positive constant smaller than $1$). In the passing, we show that the Burrows-Wheeler transform of a string of length $n$ over an alphabet of size $σ$ can be built in deterministic $O(n)$ time and space $O(n\logσ)$. We also show that within the same time and space, we can carry many sequence analysis tasks and construct some variants of the compressed suffix array and compressed suffix tree.