惯性聚合 高效追踪和阅读你感兴趣的博客、新闻、科技资讯
阅读原文 在惯性聚合中打开

推荐订阅源

V
V2EX
酷 壳 – CoolShell
酷 壳 – CoolShell
美团技术团队
有赞技术团队
有赞技术团队
Hugging Face - Blog
Hugging Face - Blog
罗磊的独立博客
S
SegmentFault 最新的问题
D
Docker
博客园 - 司徒正美
雷峰网
雷峰网
V
Visual Studio Blog
云风的 BLOG
云风的 BLOG
G
Google Developers Blog
The GitHub Blog
The GitHub Blog
A
About on SuperTechFans
让小产品的独立变现更简单 - ezindie.com
让小产品的独立变现更简单 - ezindie.com
博客园 - Franky
月光博客
月光博客
Cyber Security Advisories - MS-ISAC
Cyber Security Advisories - MS-ISAC
H
Hackread – Cybersecurity News, Data Breaches, AI and More
T
The Blog of Author Tim Ferriss
Google DeepMind News
Google DeepMind News
MyScale Blog
MyScale Blog
MongoDB | Blog
MongoDB | Blog

cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Linear-time string indexing and analysis in small space
Djamal Belazzougui, Fabio Cunial, Juha Kärkkäinen, Veli Mäkinen · 2016-09-21 · via cs.DS updates on arXiv.org

The field of succinct data structures has flourished over the last 16 years. Starting from the compressed suffix array (CSA) by Grossi and Vitter (STOC 2000) and the FM-index by Ferragina and Manzini (FOCS 2000), a number of generalizations and applications of string indexes based on the Burrows-Wheeler transform (BWT) have been developed, all taking an amount of space that is close to the input size in bits. In many large-scale applications, the construction of the index and its usage need to be considered as one unit of computation. Efficient string indexing and analysis in small space lies also at the core of a number of primitives in the data-intensive field of high-throughput DNA sequencing. We report the following advances in string indexing and analysis. We show that the BWT of a string $T\in \{1,\ldots,σ\}^n$ can be built in deterministic $O(n)$ time using just $O(n\logσ)$ bits of space, where $σ\leq n$. Within the same time and space budget, we can build an index based on the BWT that allows one to enumerate all the internal nodes of the suffix tree of $T$. Many fundamental string analysis problems can be mapped to such enumeration, and can thus be solved in deterministic $O(n)$ time and in $O(n\logσ)$ bits of space from the input string. We also show how to build many of the existing indexes based on the BWT, such as the CSA, the compressed suffix tree (CST), and the bidirectional BWT index, in randomized $O(n)$ time and in $O(n\logσ)$ bits of space. The previously fastest construction algorithms for BWT, CSA and CST, which used $O(n\logσ)$ bits of space, took $O(n\log{\logσ})$ time for the first two structures, and $O(n\log^εn)$ time for the third, where $ε$ is any positive constant. Contrary to the state of the art, our bidirectional BWT index supports every operation in constant time per element in its output.