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PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
On Practical Accuracy of Edit Distance Approximation Algo...
Hiroyuki Hanada, Mineichi Kudo, Atsuyoshi Nakamura · 2017-01-22 · via cs.DS updates on arXiv.org

The edit distance is a basic string similarity measure used in many applications such as text mining, signal processing, bioinformatics, and so on. However, the computational cost can be a problem when we repeat many distance calculations as seen in real-life searching situations. A promising solution to cope with the problem is to approximate the edit distance by another distance with a lower computational cost. There are, indeed, many distances have been proposed for approximating the edit distance. However, their approximation accuracies are evaluated only theoretically: many of them are evaluated only with big-oh (asymptotic) notations, and without experimental analysis. Therefore, it is beneficial to know their actual performance in real applications. In this study we compared existing six approximation distances in two approaches: (i) we refined their theoretical approximation accuracy by calculating up to the constant coefficients, and (ii) we conducted some experiments, in one artificial and two real-life data sets, to reveal under which situations they perform best. As a result we obtained the following results: [Batu 2006] is the best theoretically and [Andoni 2010] experimentally. Theoretical considerations show that [Batu 2006] is the best if the string length n is large enough (n >= 300). [Andoni 2010] is experimentally the best for most data sets and theoretically the second best. [Bar-Yossef 2004], [Charikar 2006] and [Sokolov 2007], despite their middle-level theoretical performance, are experimentally as good as [Andoni 2010] for pairs of strings with large alphabet size.