A monotone CNF formula is a Boolean formula in conjunctive normal form where each variable appears positively. We design a deterministic fully polynomial-time approximation scheme (FPTAS) for counting the number of satisfying assignments for a given monotone CNF formula when each variable appears in at most $5$ clauses. Equivalently, this is also an FPTAS for counting set covers where each set contains at most $5$ elements. If we allow variables to appear in a maximum of $6$ clauses (or sets to contain $6$ elements), it is NP-hard to approximate it. Thus, this gives a complete understanding of the approximability of counting for monotone CNF formulas. It is also an important step towards a complete characterization of the approximability for all bounded degree Boolean #CSP problems. In addition, we study the hypergraph matching problem, which arises naturally towards a complete classification of bounded degree Boolean #CSP problems, and show an FPTAS for counting 3D matchings of hypergraphs with maximum degree $4$. Our main technique is correlation decay, a powerful tool to design deterministic FPTAS for counting problems defined by local constraints among a number of variables. All previous uses of this design technique fall into two categories: each constraint involves at most two variables, such as independent set, coloring, and spin systems in general; or each variable appears in at most two constraints, such as matching, edge cover, and holant problem in general. The CNF problems studied here have more complicated structures than these problems and require new design and proof techniques. As it turns out, the technique we developed for the CNF problem also works for the hypergraph matching problem. We believe that it may also find applications in other CSP or more general counting problems.