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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Fast Longest Common Extensions in Small Space
Alberto Policriti, Nicola Prezza · 2016-07-22 · via cs.DS updates on arXiv.org

In this paper we address the longest common extension (LCE) problem: to compute the length $\ell$ of the longest common prefix between any two suffixes of $T\in Σ^n$ with $ Σ= \{0, \ldots σ-1\} $. We present two fast and space-efficient solutions based on (Karp-Rabin) \textit{fingerprinting} and \textit{sampling}. Our first data structure exploits properties of Mersenne prime numbers when used as moduli of the Karp-Rabin hash function and takes $n\lceil \log_2σ\rceil$ bits of space. Our second structure works with any prime modulus and takes $n\lceil \log_2σ\rceil + n/w + w\log_2 n$ bits of space ($ w $ memory-word size). Both structures support $\mathcal O\left(m\logσ/w \right)$-time extraction of any length-$m$ text substring, $\mathcal O(\log\ell)$-time LCE queries with high probability, and can be built in optimal $\mathcal O(n)$ time. In the first case, ours is the first result showing that it is possible to answer LCE queries in $o(n)$ time while using only $\mathcal O(1)$ words on top of the space required to store the text. Our results improve the state of the art in space usage, query times, and preprocessing times and are extremely practical: we present a C++ implementation that is very fast and space-efficient in practice.