In Grochow and Qiao (SIAM J. Comput., 2021), the complexity class Tensor Isomorphism (TI) was introduced and isomorphism problems for groups, algebras, and polynomials were shown to be TI-complete. In this paper, we study average-case algorithms for several TI-complete problems over finite fields, including algebra isomorphism, matrix code conjugacy, and $4$-tensor isomorphism. Our main results are as follows. Over the finite field of order $q$, we devise (1) average-case polynomial-time algorithms for algebra isomorphism and matrix code conjugacy that succeed in a $1/Θ(q)$ fraction of inputs and (2) an average-case polynomial-time algorithm for the $4$-tensor isomorphism that succeeds in a $1/q^{Θ(1)}$ fraction of inputs. Prior to our work, algorithms for algebra isomorphism with rigorous average-case analyses ran in exponential time, albeit succeeding on a larger fraction of inputs (Li--Qiao, FOCS'17; Brooksbank--Li--Qiao--Wilson, ESA'20; Grochow--Qiao--Tang, STACS'21). These results reveal a finer landscape of the average-case complexities of TI-complete problems, providing guidance for cryptographic systems based on isomorphism problems. Our main technical contribution is to introduce the spectral properties of random matrices into algorithms for TI-complete problems. This leads to not only new algorithms but also new questions in random matrix theory over finite fields. To settle these questions, we need to extend both the generating function approach as in Neumann and Praeger (J. London Math. Soc., 1998) and the characteristic sum method of Gorodetsky and Rodgers (Trans. Amer. Math. Soc., 2021).