Cheeger's inequality states that a tightly connected subset can be extracted from a graph $G$ using an eigenvector of the normalized Laplacian associated with $G$. More specifically, we can compute a subset with conductance $O(\sqrt{φ_G})$, where $φ_G$ is the minimum conductance of a set in $G$. It has recently been shown that Cheeger's inequality can be extended to hypergraphs. However, as the normalized Laplacian of a hypergraph is no longer a matrix, we can only approximate to its eigenvectors; this causes a loss in the conductance of the obtained subset. To address this problem, we here consider the heat equation on hypergraphs, which is a differential equation exploiting the normalized Laplacian. We show that the heat equation has a unique solution and that we can extract a subset with conductance $\sqrt{φ_G}$ from the solution. An analogous result also holds for directed graphs.