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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
In-Place Sparse Suffix Sorting
Nicola Prezza · 2016-08-18 · via cs.DS updates on arXiv.org

Suffix arrays encode the lexicographical order of all suffixes of a text and are often combined with the Longest Common Prefix array (LCP) to simulate navigational queries on the suffix tree in reduced space. In space-critical applications such as sparse and compressed text indexing, only information regarding the lexicographical order of a size-$b$ subset of all $n$ text suffixes is often needed. Such information can be stored space-efficiently (in $b$ words) in the sparse suffix array (SSA). The SSA and its relative sparse LCP array (SLCP) can be used as a space-efficient substitute of the sparse suffix tree. Very recently, Gawrychowski and Kociumaka [SODA 2017] showed that the sparse suffix tree (and therefore SSA and SLCP) can be built in asymptotically optimal $O(b)$ space with a Monte Carlo algorithm running in $O(n)$ time. The main reason for using the SSA and SLCP arrays in place of the sparse suffix tree is, however, their reduced space of $b$ words each. This leads naturally to the quest for in-place algorithms building these arrays. Franceschini and Muthukrishnan [ICALP 2007] showed that the full suffix array can be built in-place and in optimal running time. On the other hand, finding sub-quadratic in-place algorithms for building the SSA and SLCP for \emph{general} subsets of suffixes has been an elusive task for decades. In this paper, we give the first solution to this problem. We provide the first in-place algorithm building the full LCP array in $O(n\log n)$ expected time and the first Monte Carlo in-place algorithms building the SSA and SLCP in $O(n + b\log^2 n)$ expected time. We moreover describe the first in-place solution for the suffix selection problem: to compute the $i$-th smallest text suffix.