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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Space-Efficient Text Indexing with Mismatches using Funct...
Jackson Bibbens, Levi Borevitz, Samuel McCauley · 2026-04-02 · via cs.DS updates on arXiv.org

A classic data structure problem is to preprocess a string T of length $n$ so that, given a query $q$, we can quickly find all substrings of T with Hamming distance at most $k$ from the query string. Variants of this problem have seen significant research both in theory and in practice. For a wide parameter range, the best worst-case bounds are achieved by the "CGL tree" (Cole, Gottlieb, Lewenstein 2004), which achieves query time roughly $\tilde{O}(|q| + \log^k n + \# occ)$ where $\# occ$ is the size of the output, and space ${O}(n\log^k n)$. The CGL Tree space was recently improved to $O(n \log^{k-1} n)$ (Kociumaka, Radoszewski 2026). A natural question is whether a high space bound is necessary. How efficient can we make queries when the data structure is constrained to $O(n)$ space? While this question has seen extensive research, all known results have query time with unfavorable dependence on $n$, $k$, and the alphabet $Σ$. The state of the art query time (Chan et al. 2011) is roughly $\tilde{O}(|q| + |Σ|^k \log^{k^2 + k} n + \# occ)$. We give an $O(n)$-space data structure with query time roughly $\tilde{O}(|q| + \log^{4k} n + \log^{2k} n \# occ)$, with no dependence on $|Σ|$. Even if $|Σ| = O(1)$, this is the best known query time for linear space if $k\geq 3$ unless $\# occ$ is large. Our results give a smooth tradeoff between time and space. We also give the first sublinear-space results: we give a succinct data structure using only $o(n)$ space in addition to the text itself. Our main technical idea is to apply function inversion (Fiat, Naor 2000) to the CGL tree. Combining these techniques is not immediate; in fact, we revisit the exposition of both the Fiat-Naor data structure and the CGL tree to obtain our bounds. Along the way, we obtain improved performance for both data structures, which may be of independent interest.