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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Approximate String Matching: Theory and Applications (La ...
Ibrahim Chegrane · 2017-01-31 · via cs.DS updates on arXiv.org

The approximate string matching is a fundamental and recurrent problem that arises in most computer science fields. This problem can be defined as follows: Let $D=\{x_1,x_2,\ldots x_d\}$ be a set of $d$ words defined on an alphabet $Σ$, let $q$ be a query defined also on $Σ$, and let $k$ be a positive integer. We want to build a data structure on $D$ capable of answering the following query: find all words in $D$ that are at most different from the query word $q$ with $k$ errors. In this thesis, we study the approximate string matching methods in dictionaries, texts, and indexes, to propose practical methods that solve this problem efficiently. We explore this problem in three complementary directions: 1) The approximate string matching in the dictionary. We propose two solutions to this problem, the first one uses hash tables for $k \geq 2$, the second uses the Trie and reverse Trie, and it is restricted to (k = 1). The two solutions are adaptable, without loss of performance, to the approximate string matching in a text. 2) The approximate string matching for \textit{autocompletion}, which is, find all suffixes of a given prefix that may contain errors. We give a new solution better in practice than all the previous proposed solutions. 3) The problem of the alignment of biological sequences can be interpreted as an approximate string matching problem. We propose a solution for peers and multiple sequences alignment. \medskip All the results obtained showed that our algorithms, give the best performance on sets of practical data (benchmark from the real world). All our methods are proposed as libraries, and they are published online.