惯性聚合 高效追踪和阅读你感兴趣的博客、新闻、科技资讯
阅读原文 在惯性聚合中打开

推荐订阅源

F
Fortinet All Blogs
爱范儿
爱范儿
P
Proofpoint News Feed
OSCHINA 社区最新新闻
OSCHINA 社区最新新闻
T
Tailwind CSS Blog
J
Java Code Geeks
宝玉的分享
宝玉的分享
Jina AI
Jina AI
B
Blog
N
Netflix TechBlog - Medium
Recent Announcements
Recent Announcements
aimingoo的专栏
aimingoo的专栏
腾讯CDC
C
Check Point Blog
The Cloudflare Blog
阮一峰的网络日志
阮一峰的网络日志
博客园 - Franky
罗磊的独立博客
B
Blog RSS Feed
WordPress大学
WordPress大学
小众软件
小众软件
博客园 - 叶小钗
M
MIT News - Artificial intelligence
GbyAI
GbyAI

cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Breaking the $O(n)$-Barrier in the Construction of Compre...
Dominik Kempa, Tomasz Kociumaka · 2021-06-24 · via cs.DS updates on arXiv.org

The suffix array and the suffix tree are the two most fundamental data structures for string processing. For a length-$n$ text, however, they use $Θ(n \log n)$ bits of space, which is often too costly. To address this, Grossi and Vitter [STOC 2000] and, independently, Ferragina and Manzini [FOCS 2000] introduced space-efficient versions of the suffix array, known as the compressed suffix array (CSA) and the FM-index. Sadakane [SODA 2002] then showed how to augment them to obtain the compressed suffix tree (CST). For a length-$n$ text over an alphabet of size $σ$, these structures use only $O(n\logσ)$ bits. The biggest remaining open question is how efficiently they can be constructed. After two decades, the fastest algorithms still run in $O(n)$ time [Hon et al., FOCS 2003], which is $Θ(\log_σ n)$ factor away from the lower bound of $Ω(n/\log_σn)$. In this paper, we make the first in 20 years improvement in $n$ for this problem by proposing a new compressed suffix array and a new compressed suffix tree which admit $o(n)$-time construction algorithms while matching the space bounds and the query times of the original CSA/CST and the FM-index. More precisely, our structures take $O(n\logσ)$ bits, support SA queries and full suffix tree functionality in $O(\log^εn)$ time per operation, and can be constructed in $O(n \min(1,\logσ/\sqrt{\log n}))$ time using $O(n\logσ)$ bits of working space. We derive this result as a corollary from a much more general reduction: We prove that all parameters of a compressed suffix array/tree (query time, space, construction time, and construction working space) can essentially be reduced to those of a data structure answering new query types that we call prefix rank and prefix selection. Using the novel techniques, we also develop a new index for pattern matching.