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cs.DS updates on arXiv.org

PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
An Algorithmic Bridge Between Hamming and Levenshtein Dis...
Elazar Goldenberg, Tomasz Kociumaka, Robert Krauthgamer, Barna S · 2022-11-23 · via cs.DS updates on arXiv.org

The edit distance between strings classically assigns unit cost to every character insertion, deletion, and substitution, whereas the Hamming distance only allows substitutions. In many real-life scenarios, insertions and deletions (abbreviated indels) appear frequently but significantly less so than substitutions. To model this, we consider substitutions being cheaper than indels, with cost $1/a$ for a parameter $a\ge 1$. This basic variant, denoted $ED_a$, bridges classical edit distance ($a=1$) with Hamming distance ($a\to\infty$), leading to interesting algorithmic challenges: Does the time complexity of computing $ED_a$ interpolate between that of Hamming distance (linear time) and edit distance (quadratic time)? What about approximating $ED_a$? We first present a simple deterministic exact algorithm for $ED_a$ and further prove that it is near-optimal assuming the Orthogonal Vectors Conjecture. Our main result is a randomized algorithm computing a $(1+ε)$-approximation of $ED_a(X,Y)$, given strings $X,Y$ of total length $n$ and a bound $k\ge ED_a(X,Y)$. For simplicity, let us focus on $k\ge 1$ and a constant $ε> 0$; then, our algorithm takes $\tilde{O}(n/a + ak^3)$ time. Unless $a=\tilde{O}(1)$ and for small enough $k$, this running time is sublinear in $n$. We also consider a very natural version that asks to find a $(k_I, k_S)$-alignment -- an alignment with at most $k_I$ indels and $k_S$ substitutions. In this setting, we give an exact algorithm and, more importantly, an $\tilde{O}(nk_I/k_S + k_S\cdot k_I^3)$-time $(1,1+ε)$-bicriteria approximation algorithm. The latter solution is based on the techniques we develop for $ED_a$ for $a=Θ(k_S / k_I)$. These bounds are in stark contrast to unit-cost edit distance, where state-of-the-art algorithms are far from achieving $(1+ε)$-approximation in sublinear time, even for a favorable choice of $k$.