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PAC Learning with Bandit Feedback: Sharp Sample Complexity in the Realizable Setting Algorithms with Polynomially-Improved Approximation Factors for the $2 \rightarrow q$ Norm, and Applications A computational phase transition for learning-to-sample from Ising models Covering vertices by sequential stars Fermi-Dirac machines as quantizations of neurons A Comprehensive Evaluation of Vertex Elimination Algorithms for Algorithmic Differentiation A Tight Bound on Localization of Electrical Flows Optimal Dimension-Free Sampling for Regularized Classification Reducing the Randomness in Partition Oracles for Bounded Degree Minor-Free Graphs Beyond the Half-Approximation: Fair and Efficient Online Class Matching Efficient Uniform Sampling of Surjections via their Profiles Tractable Maximization of Budgeted Phylogenetic Diversity on Networks Utilizing Node Scanwidth Fairness in Aggregation: Optimal Top-$k$ and Improved Full Ranking Learning-Augmented Online Scheduling with Parsimonious Preemption Entropy Equivalence Testing Lumberjack: Better Differentially Private Random Forests through Heavy Hitter Detection in Trees The Secretary Problem with a Stochastic Precursor Polynomial-Time Robust Multiclass Linear Classification under Gaussian Marginals Efficient Banzhaf-Based Data Valuation for $k$-Nearest Neighbors Classification Block-Sphere Vector Quantization An Approximation Algorithm for Graph Label Selection Iterative Chow Filtering for Learning with Distribution Shift Complexity of Non-Log-Concave Sampling in Fisher Information Stochastic Matching via Local Sparsification Finite Sample Bounds for Learning with Score Matching What is Learnable in Valiant's Theory of the Learnable? Provable Quantization with Randomized Hadamard Transform Min-Max Optimization Requires Exponentially Many Queries Fast and Compact Graph Cuts for the Boykov-Kolmogorov Algorithm A proximal gradient algorithm for composite log-concave sampling
Dynamic r-index: An Updatable Self-Index in LCP-bounded Time
Takaaki Nishimoto, Yasuo Tabei · 2025-04-28 · via cs.DS updates on arXiv.org

A self-index is a compressed data structure that supports locate queries -- reporting all positions where a given pattern occurs in a string while maintaining the string in compressed form. While many self-indexes have been proposed, developing dynamically updatable ones supporting string insertions and deletions remains a challenge. The r-index (Gagie et al., JACM'20) is a representative static self-index based on the run-length Burrows-Wheeler transform (RLBWT), designed for highly repetitive strings. We present the dynamic r-index, a dynamic extension of the r-index that achieves updates in LCP-bounded time. The dynamic r-index supports count queries in $O(m \log r / \log \log r)$ time and locate queries in $O(m \log r / \log \log r + \mathsf{occ} \log r)$ time, using $O(r)$ words of space, where $m$ is the length of a query with $\mathsf{occ}$ occurrences and $r$ is the number of runs in the RLBWT. Crucially, update operations are supported in $O((m + L_{\mathsf{max}}) \log n)$ time for a substring of length $m$, where $L_{\mathsf{max}}$ is the maximum LCP value; the average running time is $O((m + L_{\mathsf{avg}}) \log n)$, where $L_{\mathsf{avg}}$ is the average LCP value. This LCP-bounded complexity is particularly advantageous for highly repetitive strings where LCP values are typically small. We experimentally demonstrate the practical efficiency of the dynamic r-index on various highly repetitive datasets.