Deep learning is revolutionizing weather forecasting, with new data-driven models achieving accuracy on par with operational physical models for medium-term predictions. However, these models often lack interpretability, making their underlying dynamics difficult to understand and explain. This paper proposes methodologies to estimate the Koopman operator, providing a linear representation of complex nonlinear dynamics to enhance the transparency of data-driven models. Despite its potential, applying the Koopman operator to large-scale problems, such as atmospheric modeling, remains challenging. This study aims to identify the limitations of existing methods, refine these models to overcome various bottlenecks, and introduce novel convolutional neural network architectures that capture simplified dynamics.