Web Application Firewalls are crucial for protecting web applications against a wide range of cyber threats. Traditional Web Application Firewalls often struggle to effectively distinguish between malicious and legitimate traffic, leading to limited efficacy in threat detection. To overcome these limitations, this paper proposes an Adaptive Dual-Layer WAF employing a two-layered Machine Learning model designed to enhance the accuracy of anomaly and threat detection. The first layer employs a Decision Tree (DT) algorithm to detect anomalies by identifying traffic deviations from established normal patterns. The second layer employs Support Vector Machine to classify these anomalies as either threat anomalies or benign anomalies. Our Adaptive Dual Layer WAF incorporates comprehensive data pre-processing and feature engineering techniques and has been thoroughly evaluated using five large benchmark datasets. Evaluation using these datasets shows that ADL WAF achieves a detection accuracy of 99.88% and a precision of 100%, significantly enhancing anomaly detection and reducing false positives. These findings suggest that integrating machine learning techniques into WAFs can substantially improve web application security by providing more accurate and efficient threat detection.