Contemporary progress in large language models (LLMs) has revealed notable inferential capacities via reinforcement learning (RL) employing verifiable reward, facilitating the development of O1 and R1-like reasoning models. Directly training from base models with RL is called zero-RL. However, previous works rely upon activating LLMs' inherent capacities through fixed prompt templates. This strategy introduces substantial sampling inefficiencies for weak LLMs, as the majority of problems generate invalid outputs during accuracy-driven filtration in reasoning tasks, which causes a waste of samples. To solve this issue, we propose Cog-Rethinker, a novel hierarchical metacognitive RL framework for LLM reasoning. Our Cog-Rethinker mainly focuses on the rollout procedure in RL training. After the direct rollout, our Cog-Rethinker improves sample utilization in a hierarchical metacognitive two-stage framework. By leveraging human cognition during solving problems, firstly, it prompts policy to decompose zero-accuracy problems into subproblems to produce final reasoning results. Secondly, with zero-accuracy problems in previous rollout stage, it further prompts policy to refine these answers by referencing previous wrong solutions. Moreover, to enable cold-start of the two new reasoning patterns and maintain train-test consistency across prompt templates, our Cog-Rethinker applies supervised fine-tuning on the policy using correct samples of the two stages with direct rollout template. Experimental results demonstrate Cog-Rethinker's superior performance on various mathematical reasoning benchmarks, we also analyzed its improved sample efficiency that accelerates convergence compared to baseline methods.